Import Log for protisten.de

Started: June 03, 2024 12:45
Completed: 01:28:47
Failed: No.
Status: completed

Events (most recent first):

show all (583)

00:33:18 (warns) There were NO new pages, skipping... base:81>delayed_job:21>resource:229>fast:10,155>page_creator:22
00:32:52 (warns) All existing content has been destroyed for the resource. lifecycle:61>base:81>delayed_job:21>resource:229>fast:10,143
13:44:36 (warns) FAILED on build_nodes query (MetaData), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)... publish:274,306,279,279,281,286
13:44:36 (warns) Couldn't load the external resource at: http://10.252.248.42:8080/data/ptgdp/publish_metadata.tsv publish:274,306,279,279,281,285
13:44:36 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'http://10.252.248.42:8080/data/ptgdp/publish_metadata.tsv' AS row WITH row WHERE 1=1 MERGE (metadata:MetaData { eol_pk: row.eol_pk }) ON CREATE SET metadata.source = row.source ON MATCH SET metadata.source = row.source ON CREATE SET metadata.literal = row.literal ON MATCH SET metadata.literal = row.literal ON CREATE SET metadata.measurement = row.measurement ON MATCH SET metadata.measurement = row.measurement} MESSAGE: Couldn't load the external resource at: http://10.252.248.42:8080/data/ptgdp/publish_metadata.tsv publish:279,279,282,505,566,574
13:43:39 (warns) FAILED on build_nodes query (MetaData), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)... publish:274,306,279,279,281,286
13:43:39 (warns) Couldn't load the external resource at: http://10.252.248.42:8080/data/ptgdp/publish_metadata.tsv publish:274,306,279,279,281,285
13:43:39 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'http://10.252.248.42:8080/data/ptgdp/publish_metadata.tsv' AS row WITH row WHERE 1=1 MERGE (metadata:MetaData { eol_pk: row.eol_pk }) ON CREATE SET metadata.source = row.source ON MATCH SET metadata.source = row.source ON CREATE SET metadata.literal = row.literal ON MATCH SET metadata.literal = row.literal ON CREATE SET metadata.measurement = row.measurement ON MATCH SET metadata.measurement = row.measurement} MESSAGE: Couldn't load the external resource at: http://10.252.248.42:8080/data/ptgdp/publish_metadata.tsv publish:279,279,282,505,566,574
12:13:05 (warns) Trait Publishing failed: No such file or directory @ rb_sysopen - /app/harvesting//ptgdp/publish_traits.tsv FROM /app/app/models/content_server_connection.rb:70:in `readlines' << /app/app/models/content_server_connection.rb:70:in `file_contents_to_clean_string' << /app/app/models/content_server_connection.rb:66:in `contents' << /app/app/models/content_server_connection.rb:48:in `block in copy_harvesting_file' << /app/app/models/content_server_connection.rb:48:in `open' << /app/app/models/content_server_connection.rb:48:in `copy_harvesting_file' delayed_job:21>resource:229>fast:10,160,203,207
12:12:47 (warns) There were NO new pages, skipping... base:81>delayed_job:21>resource:229>fast:10,155>page_creator:22
12:12:41 (warns) All existing content has been destroyed for the resource. delayed_job:71>base:81>delayed_job:21>resource:229>fast:10,143
12:12:08 (warns) Trait Publishing failed: No such file or directory @ rb_sysopen - /app/harvesting//ptgdp/publish_traits.tsv FROM /app/app/models/content_server_connection.rb:70:in `readlines' << /app/app/models/content_server_connection.rb:70:in `file_contents_to_clean_string' << /app/app/models/content_server_connection.rb:66:in `contents' << /app/app/models/content_server_connection.rb:48:in `block in copy_harvesting_file' << /app/app/models/content_server_connection.rb:48:in `open' << /app/app/models/content_server_connection.rb:48:in `copy_harvesting_file' delayed_job:21>resource:229>fast:10,160,203,207
12:11:50 (warns) Skipping reindexing. You should reindex soon. base:81>delayed_job:21>resource:229>fast:10,155>page_creator:32
12:11:28 (warns) All existing content has been destroyed for the resource. delayed_job:71>base:81>delayed_job:21>resource:229>fast:10,143
12:46:32 (warns) fast.rb:334>slurp.rb:20>content_server_connection.rb:114>pub_log.rb:48= MISSING https://content.eol.org/data/ptgdp/publish_metadata.tsv [404] (9 bytes); skipping
12:46:32 (warns) fast.rb:334>slurp.rb:20>content_server_connection.rb:114>pub_log.rb:48= MISSING https://content.eol.org/data/ptgdp/publish_traits.tsv [404] (9 bytes); skipping
12:46:16 (warns) resource.rb:225>fast.rb:155>page_creator.rb:32>pub_log.rb:48= Skipping reindexing. You should reindex soon.
12:46:14 (warns) resource.rb:225>fast.rb:246>content_server_connection.rb:114>pub_log.rb:48= MISSING https://content.eol.org/data/ptgdp/publish_content_sections.tsv [404] (9 bytes); skipping
12:46:14 (warns) resource.rb:225>fast.rb:246>content_server_connection.rb:114>pub_log.rb:48= MISSING https://content.eol.org/data/ptgdp/publish_references.tsv [404] (9 bytes); skipping
12:46:10 (warns) resource.rb:225>fast.rb:246>content_server_connection.rb:114>pub_log.rb:48= MISSING https://content.eol.org/data/ptgdp/publish_articles.tsv [404] (9 bytes); skipping
12:46:10 (warns) resource.rb:225>fast.rb:246>content_server_connection.rb:114>pub_log.rb:48= MISSING https://content.eol.org/data/ptgdp/publish_vernaculars.tsv [404] (9 bytes); skipping
12:46:07 (warns) resource.rb:225>fast.rb:246>content_server_connection.rb:114>pub_log.rb:48= MISSING https://content.eol.org/data/ptgdp/publish_identifiers.tsv [404] (9 bytes); skipping
12:46:07 (warns) resource.rb:225>fast.rb:246>content_server_connection.rb:114>pub_log.rb:48= MISSING https://content.eol.org/data/ptgdp/publish_bibliographic_citations.tsv [404] (9 bytes); skipping
12:46:06 (warns) resource.rb:225>fast.rb:246>content_server_connection.rb:114>pub_log.rb:48= MISSING https://content.eol.org/data/ptgdp/publish_referents.tsv [404] (9 bytes); skipping
12:46:05 (warns) delayed_job.rb:17>resource.rb:225>fast.rb:143>pub_log.rb:48= All existing content has been destroyed for the resource.