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Mycolicibacterium

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Mycolicibacterium is a genus of Gram-positive rod-shaped bacteria in the family Mycobacteriaceae from the order Mycobacteriales.[1]

Members of Mycolicibacterium were demarcated from the larger genus Mycobacterium in 2018 by Gupta et al. based on evidence from various phylogenetic trees constructed based on conserved genome sequences, comparative genomic analyses and average amino acid identity values.[1] In addition to this genus, the study proposed the division of Mycobacterium into a total of five distinct genera, which was met with some resistance by some of the scientific community. The resistance was based on the grounds that Mycobacterium contains some clinically relevant species and name changes might cause confusion among clinicians and other researchers.[2]

In 2020, Yamada et al. analyzed the fundamental morphological properties of the new genera, including the cell diameter, cell length, cell perimeter, cell circularity and aspect ratio, and determined that there were significant differences between the five genera, thus supporting the new division.[3]

The name Mycolicibacterium is derived from the Latin noun acidum mycolicum (translates to mycolic acid) and the Latin noun bacterium (translates to small rod). Together the name refers to a genus of mycolic acid containing rod-shaped bacteria.[1]

Biochemical characteristics and molecular signatures[1]

Mycolicibacterium is a genus of rapidly-growing bacteria, taking less than seven days to form colonies. Members are also non-chromogenic (does not produce pigment), and are positive for the 3 day arylsulfatase activity test, nitrate reductase and iron uptake. Most species are saprophytic and are able to process decaying organic matter for nutrients. While members of this genus are not considered to be pathogenic, some species have been reported to cause infections and diseases. The genome size for Mycolicibacterium is between 3.95–8.0 Mbp and their G+C content is between 65.4–70.3 mol%.

Four conserved signature indels (CSIs) were identified through genomic analyses as uniquely present in this genus in the following proteins: LacI family transcriptional regulator, cyclase, CDP-diacylglycerol–glycerol-3-phosphate 3-phosphatidyltransferase and CDP-diacylglycerol–serine O-phosphatidyltransferase.[1] These CSIs serve as a reliable molecular means for distinguishing members of this Mycolicibacterium from other genera in the family Mycobacteriaceae and all other bacteria. Additionally, 10 unique conserved signature proteins (CSPs) were identified for this genus.

Species

The phylogeny of Mycolicibacterium[1][a] Mycolicibacterium

Mycolicibacterium mageritense

Mycolicibacterium brisbanense

Mycolicibacterium houstonense

Mycolicibacterium peregrinum

Mycolicibacterium fortuitum

Mycolicibacterium neworleansense

Mycolicibacterium setense

Mycolicibacterium septicum

Mycolicibacterium porcinum

Mycolicibacterium vulneris

Mycolicibacterium boenickei

Mycolicibacterium farcinogenes

Mycolicibacterium senegalense

Mycolicibacterium conceptionense

Mycolicibacterium wolinksyi

"Mycolicibacterium goodii"

Mycolicibacterium smegmatis

Mycolicibacterium mucogenicum

Mycolicibacterium llatzerense

Mycolicibacterium canariasense

Mycolicibacterium cosmeticum

Mycolicibacterium diemhoferi

Mycolicibacterium bacteremicum

Mycolicibacterium neoaurum

Mycolicibacterium vaccae

Mycolicibacterium austroafricanum

Mycolicibacterium parafortuitum

Mycolicibacterium gilvum

Mycolicibacterium aurum

Mycolicibacterium iranicum

Mycolicibacterium chubuense

Mycolicibacterium obuense

Mycolicibacterium chlorophenolicum

Mycolicibacterium rufum

Mycolicibacterium hassiacum

Mycolicibacterium thermoresistibile

Mycolicibacterium moriokaense

Mycolicibacterium rhodesiae

Mycolicibacterium tusciae

Mycolicibacterium elephantis

Mycolicibacterium holstaticum

Mycolicibacterium celeriflavum

Mycolicibacterium acapulcensis

Mycolicibacterium novocastrense

"Mycolicibacterium komanii"

Mycolicibacterium malmesburyense

Mycolicibacterium flavescens

Mycolicibacterium rutilum

Mycolicibacterium phlei

Mycolicibacterium doricum

Mycolicibacterium monacense

Mycolicibacterium confluentis

Mycolicibacterium insubricum

Mycolicibacterium fallax

Mycolicibacterium aromaticivorans

Mycolicibacterium litorale

Mycobacterium (outgroup)

Notes

  1. ^ Not all species are included in this phylogenetic tree.

Mycolicibacterium comprises the followings species:[4]

References

  1. ^ a b c d e f g Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera". Frontiers in Microbiology. 9: 67. doi:10.3389/fmicb.2018.00067. ISSN 1664-302X. PMC 5819568. PMID 29497402.
  2. ^ Tortoli, Enrico; Brown-Elliott, Barbara A.; Chalmers, James D.; Cirillo, Daniela M.; Daley, Charles L.; Emler, Stefan; Floto, R. Andres; Garcia, Maria J.; Hoefsloot, Wouter; Koh, Won-Jung; Lange, Christoph (2019-07-01). "Same meat, different gravy: Ignore the new names of mycobacteria". European Respiratory Journal. 54 (1). doi:10.1183/13993003.00795-2019. ISSN 0903-1936. PMID 31296783. S2CID 195893005.
  3. ^ Yamada, Hiroyuki; Chikamatsu, Kinuyo; Aono, Akio; Murata, Kazuyoshi; Miyazaki, Naoyuki; Kayama, Yoko; Bhatt, Apoorva; Fujiwara, Nagatoshi; Maeda, Shinji; Mitarai, Satoshi (2020). "Fundamental Cell Morphologies Examined With Cryo-TEM of the Species in the Novel Five Genera Robustly Correlate With New Classification in Family Mycobacteriaceae". Frontiers in Microbiology. 11: 562395. doi:10.3389/fmicb.2020.562395. ISSN 1664-302X. PMC 7701246. PMID 33304323.
  4. ^ Euzéby JP, Parte AC. "Mycolicibacterium". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 25, 2022.
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Mycolicibacterium: Brief Summary

provided by wikipedia EN

Mycolicibacterium is a genus of Gram-positive rod-shaped bacteria in the family Mycobacteriaceae from the order Mycobacteriales.

Members of Mycolicibacterium were demarcated from the larger genus Mycobacterium in 2018 by Gupta et al. based on evidence from various phylogenetic trees constructed based on conserved genome sequences, comparative genomic analyses and average amino acid identity values. In addition to this genus, the study proposed the division of Mycobacterium into a total of five distinct genera, which was met with some resistance by some of the scientific community. The resistance was based on the grounds that Mycobacterium contains some clinically relevant species and name changes might cause confusion among clinicians and other researchers.

In 2020, Yamada et al. analyzed the fundamental morphological properties of the new genera, including the cell diameter, cell length, cell perimeter, cell circularity and aspect ratio, and determined that there were significant differences between the five genera, thus supporting the new division.

The name Mycolicibacterium is derived from the Latin noun acidum mycolicum (translates to mycolic acid) and the Latin noun bacterium (translates to small rod). Together the name refers to a genus of mycolic acid containing rod-shaped bacteria.

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Mycolicibacterium ( French )

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Mycolicibacterium est un genre de Mycobactéries créé en 2018 à la suite de la révision du genre Mycobacterium par R.S. Gupta et al.[1] Cette création a été reprise par une publication dans l'IJSEM, validant ainsi les nouveaux noms binomiaux[2].

Liste d'espèces

Selon la LPSN

Provisoirement surnommé « clade Fortuitum-Vaccae » par ses auteurs, ce nouveau taxon est le plus grand des quatre nouveaux genres créés à cette occasion. Il est plus éloigné que Mycolicibacter et Mycolicibacillus du nouveau genre Mycobacterium, et se compose en quasi-totalité d'espèces auparavant classées dans ce dernier (à l'exception de M. stellarae)[3] :

Ces nouveaux noms binomiaux sont des synonymes. Comme l'ont souligné plusieurs microbiologistes spécialistes, l'usage des anciens noms binomiaux (avec « Mycobacterium » à la place de « Mycolicibacterium ») est toujours admis[4],[5].

Notes et références

  1. Gupta RS et al. « Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera » Front Microbiol. 2108 Feb;9:67. Accès libre.
  2. Oren A & Garrity G « List of new names and new combinations previously effectively, but not validly, published » Int J Syst Evol Microbiol. 2018 May;68(5):1411-1417. Accès libre.
  3. https://lpsn.dsmz.de/genus/mycolicibacterium, consulté le 16/01/21.
  4. Tortoli E et al. « Same meat, different gravy: ignore the new names of mycobacteria » Eur Respir J. 2019 Jul;54(1):1900795. Accès libre.
  5. Oren A & Trujillo ME « On the valid publication of names of mycobacteria » Eur Respir J 2019 Oct;54(4):1901483. doi: 10.1183/13993003.01483-2019.
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Mycolicibacterium: Brief Summary ( French )

provided by wikipedia FR

Mycolicibacterium est un genre de Mycobactéries créé en 2018 à la suite de la révision du genre Mycobacterium par R.S. Gupta et al. Cette création a été reprise par une publication dans l'IJSEM, validant ainsi les nouveaux noms binomiaux.

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copyright
Auteurs et éditeurs de Wikipedia
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wikipedia FR